STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1083PFAM: metallophosphoesterase; KEGG: bja:bll2356 serine/threonine protein phosphatase I. (250 aa)    
Predicted Functional Partners:
RPE_1082
Hypothetical protein.
       0.539
RPE_1203
Putative CheA signal transduction histidine kinases; PFAM: Hpt domain protein.
  
  
 0.450
RPE_2090
PFAM: Extensin family protein; KEGG: rpc:RPC_2178 extensin-like.
 
     0.444
RPE_4160
TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rpc:RPC_4106 D-3-phosphoglycerate dehydrogenase.
 
  
 0.407
RPE_4351
PFAM: Extensin family protein; KEGG: rpc:RPC_4292 extensin-like.
 
     0.403
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.