STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1086TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bja:bll6292 probable Hemolysin secretion protein D. (478 aa)    
Predicted Functional Partners:
RPE_1085
Type I secretion system ATPase; KEGG: bja:bll6293 HlyB/MsbA family ABC transporter; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase.
 
 0.992
RPE_3511
KEGG: nha:Nham_3026 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.
  
 0.740
RPE_2748
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: rpc:RPC_2568 type I secretion outer membrane protein, TolC.
 
 
 0.734
RPE_1008
KEGG: rpd:RPD_1561 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.726
RPE_1009
KEGG: rpd:RPD_1562 RTX toxins and related Ca2+-binding proteins-like.
 
  
 0.697
RPE_2739
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rpc:RPC_2557 RND efflux system, outer membrane lipoprotein, NodT.
  
 
 0.654
RPE_3328
KEGG: rpa:RPA2374 hypothetical protein.
  
 
 0.654
RPE_2036
KEGG: rpa:RPA3612 hypothetical protein.
  
 
 0.591
RPE_0004
KEGG: rpc:RPC_0004 hypothetical protein.
 
  
 0.555
RPE_3513
PFAM: Hemolysin-type calcium-binding region; KEGG: rpb:RPB_0805 glycerophosphoryl diester phosphodiesterase.
 
  
 0.531
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.