STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1093PFAM: sugar transferase; KEGG: bja:blr2358 probable glycosyl transferase. (296 aa)    
Predicted Functional Partners:
RPE_0807
PFAM: lipopolysaccharide biosynthesis; KEGG: rru:Rru_A1490 protein-tyrosine kinase.
 
  
 0.939
RPE_3494
TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: ret:RHE_CH01358 putative teichoic acid biosynthesis, UDP-N-acetyl-D-mannosaminuronic acid transferase protein; Belongs to the glycosyltransferase 26 family.
   
 0.917
RPE_3498
PFAM: lipopolysaccharide biosynthesis; KEGG: ccr:CC0164 hypothetical protein.
 
  
 0.892
RPE_3497
KEGG: rpc:RPC_4235 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein.
  
  
 0.881
RPE_4272
KEGG: rpc:RPC_4235 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein.
  
  
 0.881
RPE_2845
PFAM: lipopolysaccharide biosynthesis; KEGG: rpc:RPC_2684 lipopolysaccharide biosynthesis.
 
  
 0.864
RPE_4257
PFAM: transferase hexapeptide repeat containing protein; KEGG: mag:amb0053 acetyltransferase.
      0.818
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
  
 0.796
RPE_1088
KEGG: ppu:PP3128 exopolysaccharide biosynthesis/transport protein, putative.
 
  
 0.779
RPE_4917
PFAM: polysaccharide export protein; KEGG: rpc:RPC_4940 polysaccharide export protein.
 
  
 0.762
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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