STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1100KEGG: mca:MCA1423 glycosyl transferase, family 25. (242 aa)    
Predicted Functional Partners:
RPE_1102
PFAM: glycosyl transferase, family 2; KEGG: ppu:PP3137 glycosyl transferase, group 2 family protein.
 
   
 0.775
RPE_1101
PFAM: glycosyl transferase, group 1; KEGG: ppu:PP3139 glycosyl transferase, group 1 family protein.
 
   
 0.703
RPE_1105
Hypothetical protein.
 
  
 0.625
RPE_1344
PFAM: Haem oxygenase; KEGG: rpc:RPC_1310 heme oxygenase (decyclizing).
  
     0.521
RPE_1103
PFAM: glycosyl transferase, group 1; KEGG: ava:Ava_0842 glycosyl transferase, group 1.
     
 0.475
RPE_0518
PFAM: membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG); KEGG: rpc:RPC_0077 membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG).
  
     0.457
RPE_1099
TIGRFAM: methyltransferase FkbM family; KEGG: fra:Francci3_4064 methyltransferase FkbM.
       0.429
RPE_2671
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1067 TPR repeat protein.
     
 0.429
RPE_2127
PFAM: FAD dependent oxidoreductase; KEGG: rpc:RPC_3288 FAD dependent oxidoreductase.
  
     0.410
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.