STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1105Hypothetical protein. (449 aa)    
Predicted Functional Partners:
RPE_2842
PFAM: sugar transferase; KEGG: rpd:RPD_2694 sugar transferase.
  
  
 0.888
RPE_4256
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.882
RPE_1516
dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: rpa:RPA3925 putative dTDP-glucose 4,6-dehydratase.
  
  
 0.866
RPE_1101
PFAM: glycosyl transferase, group 1; KEGG: ppu:PP3139 glycosyl transferase, group 1 family protein.
 
  
 0.848
RPE_1102
PFAM: glycosyl transferase, family 2; KEGG: ppu:PP3137 glycosyl transferase, group 2 family protein.
 
  
 0.837
RPE_1089
PFAM: lipopolysaccharide biosynthesis; KEGG: ppu:PP3127 exopolysaccharide transport protein, putative.
 
  
 0.746
RPE_1120
PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bja:bll8129 UDP-glucose 6-dehydrogenase.
  
  
 0.687
RPE_1513
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: cbu:CBU_0680 UDP-glucose/GDP-mannose dehydrogenase family protein.
  
  
 0.687
RPE_3505
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: rpc:RPC_4156 UDP-glucose 6-dehydrogenase.
  
  
 0.687
RPE_4206
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: rpc:RPC_4156 UDP-glucose 6-dehydrogenase.
  
  
 0.687
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.