STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1141PFAM: transposase, mutator type; transposase, IS4 family protein; KEGG: rpc:RPC_3939 transposase, mutator type. (616 aa)    
Predicted Functional Partners:
RPE_1142
Hypothetical protein; KEGG: bja:blr3893 putative transposase.
 
     0.718
RPE_1117
KEGG: nha:Nham_4212 integrase, catalytic region.
  
     0.621
RPE_1140
Transposase, mutator type; Required for the transposition of the insertion element.
 
    
0.571
RPE_1118
Hypothetical protein; KEGG: nha:Nham_4211 transposase IS3/IS911.
 
    0.547
RPE_1139
Hypothetical protein; KEGG: nha:Nham_4483 ArdC gene in pSa(IncW plasmid)-like.
       0.499
RPE_3042
PFAM: transposase, IS4 family protein; KEGG: atc:AGR_L_863gl hypothetical protein.
 
     0.453
RPE_3467
PFAM: Polypeptide-transport-associated domain protein, ShlB-type; KEGG: rpc:RPC_2921 hemolysin activation/secretion protein.
  
  
 0.427
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.