STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1167KEGG: rpc:RPC_1106 hypothetical protein. (214 aa)    
Predicted Functional Partners:
RPE_1169
KEGG: rpc:RPC_1108 putative chemotaxis protein precursor.
 
     0.953
RPE_1168
PFAM: OmpA/MotB domain protein; KEGG: rpc:RPC_1107 OmpA/MotB.
 
     0.946
RPE_1166
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
   
 0.945
RPE_1165
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
     0.880
RPE_1170
PFAM: flagellar hook-length control protein; KEGG: rpc:RPC_1109 putative chemotaxis MotD protein.
 
     0.876
RPE_1171
PFAM: Lytic transglycosylase, catalytic; KEGG: rpc:RPC_1110 lytic transglycosylase, catalytic.
 
     0.873
RPE_1163
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
   
 0.859
RPE_1161
KEGG: rpc:RPC_1100 hypothetical protein.
 
   
 0.858
RPE_1174
Flagellar hook-associated 3 family protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
   
 0.853
RPE_1175
PFAM: flagellar FlaF family protein; KEGG: rpc:RPC_1114 flagellar FlaF.
 
     0.845
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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