STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1229PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: rpd:RPD_1160 NADH ubiquinone oxidoreductase, 20 kDa subunit. (333 aa)    
Predicted Functional Partners:
RPE_1230
PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rpd:RPD_1161 nickel-dependent hydrogenase, large subunit.
 
 0.999
RPE_1232
PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rpc:RPC_3771 nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 0.999
RPE_1240
KEGG: rpd:RPD_1172 coenzyme F420-reducing hydrogenase alpha subunit-like.
 
 0.998
RPE_1233
TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: rpa:RPA0964 Ni/Fe-hydrogenase 1 B-type cytochrome subunit.
 
 
 0.996
RPE_1248
PAS/PAC sensor signal transduction histidine kinase; KEGG: rpd:RPD_1180 ATP-binding region, ATPase-like; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
 0.982
RPE_1231
KEGG: rpd:RPD_1162 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; Twin-arginine translocation pathway signal; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein.
 
 
 
0.965
RPE_1237
PFAM: HupH hydrogenase expression protein; KEGG: rpd:RPD_1169 HupH hydrogenase expression protein.
 
 
 0.943
RPE_1239
KEGG: rpd:RPD_1171 putative hydrogenase expression/formation protein HupJ.
 
 
 0.918
RPE_1234
HyaD peptidase. Aspartic peptidase. MEROPS family A31; TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; hydrogenase maturation peptidase superfamily; PFAM: peptidase M52, hydrogen uptake protein; KEGG: rpa:RPA0965 hydrogenase maturation protein hupD.
 
  
 0.915
RPE_1236
PFAM: hydrogenase-1 expression HyaE; KEGG: rpd:RPD_1168 hydrogenase-1 expression HyaE; Belongs to the HupG/HyaE family.
 
 
 0.911
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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