STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1247Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpd:RPD_1179 sigma-54 factor, interaction region. (491 aa)    
Predicted Functional Partners:
RPE_1248
PAS/PAC sensor signal transduction histidine kinase; KEGG: rpd:RPD_1180 ATP-binding region, ATPase-like; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 0.991
RPE_1239
KEGG: rpd:RPD_1171 putative hydrogenase expression/formation protein HupJ.
 
   
 0.826
RPE_1887
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; KEGG: rpc:RPC_1252 transcriptional regulator, AraC family.
  
 
 0.819
RPE_1244
TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: rpc:RPC_3760 hydrogenase assembly chaperone HypC/HupF.
  
   0.806
RPE_1236
PFAM: hydrogenase-1 expression HyaE; KEGG: rpd:RPD_1168 hydrogenase-1 expression HyaE; Belongs to the HupG/HyaE family.
 
  
 0.799
RPE_1238
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rpd:RPD_1170 rubredoxin-type Fe(Cys)4 protein; Belongs to the rubredoxin family.
 
  
 0.796
RPE_1237
PFAM: HupH hydrogenase expression protein; KEGG: rpd:RPD_1169 HupH hydrogenase expression protein.
 
   
 0.793
RPE_0430
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.792
RPE_1240
KEGG: rpd:RPD_1172 coenzyme F420-reducing hydrogenase alpha subunit-like.
 
   
 0.788
RPE_1245
TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: rpa:RPA0977 hydrogenase expression/formation protein hypD; Belongs to the HypD family.
  
  
 0.750
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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