STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1248PAS/PAC sensor signal transduction histidine kinase; KEGG: rpd:RPD_1180 ATP-binding region, ATPase-like; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein. (463 aa)    
Predicted Functional Partners:
RPE_1247
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpd:RPD_1179 sigma-54 factor, interaction region.
 
 0.991
RPE_1240
KEGG: rpd:RPD_1172 coenzyme F420-reducing hydrogenase alpha subunit-like.
 
  
 0.986
RPE_1229
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: rpd:RPD_1160 NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
 
 0.982
RPE_1230
PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rpd:RPD_1161 nickel-dependent hydrogenase, large subunit.
 
 
 0.980
RPE_1203
Putative CheA signal transduction histidine kinases; PFAM: Hpt domain protein.
  
 
 0.963
RPE_1887
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; KEGG: rpc:RPC_1252 transcriptional regulator, AraC family.
  
 
 0.954
RPE_3921
Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: rpc:RPC_3798 multi-sensor hybrid histidine kinase.
 
 0.953
RPE_4786
Periplasmic sensor hybrid histidine kinase; PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_4823 periplasmic sensor hybrid histidine kinase.
 
 
 0.951
RPE_1370
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; KEGG: rpc:RPC_1355 multi-sensor hybrid histidine kinase.
 
0.947
RPE_2289
Periplasmic sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_3798 multi-sensor hybrid histidine kinase.
 
 0.947
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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