STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1268PFAM: BA14K family protein; KEGG: rpb:RPB_1022 BA14K-like. (128 aa)    
Predicted Functional Partners:
RPE_0517
PFAM: OmpA/MotB domain protein; KEGG: rpc:RPC_0065 OmpA/MotB.
  
     0.626
RPE_3819
PFAM: cyclic nucleotide-binding; KEGG: rpc:RPC_2203 cyclic nucleotide-binding domain (cNMP-BD) protein.
  
     0.606
RPE_4125
PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: rpc:RPC_4001 polysaccharide biosynthesis protein.
  
     0.530
RPE_0288
KEGG: rpa:RPA0183 hypothetical protein.
  
     0.518
RPE_0698
KEGG: rpc:RPC_0771 hypothetical protein.
  
     0.493
RPE_1269
KEGG: rpc:RPC_1220 hypothetical protein.
       0.490
RPE_4165
KEGG: rpa:RPA4315 hypothetical protein.
  
     0.487
RPE_1266
KEGG: rpc:RPC_1210 putative nitrate transporter component, NrtA.
       0.483
RPE_1267
PFAM: response regulator receiver; ANTAR domain protein; KEGG: rpc:RPC_1211 response regulator receiver (CheY-like) and ANTAR domain protein.
       0.483
RPE_0695
KEGG: rpc:RPC_0768 hypothetical protein.
  
     0.452
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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