STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1302KEGG: rpc:RPC_1246 hypothetical protein. (168 aa)    
Predicted Functional Partners:
RPE_1303
KEGG: rpd:RPD_3774 hypothetical protein.
 
     0.948
RPE_1304
KEGG: rpb:RPB_4019 hypothetical protein.
       0.738
RPE_2692
PFAM: Sporulation domain protein; KEGG: rpc:RPC_2509 sporulation related.
   
 
 0.693
RPE_1300
PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: rpd:RPD_3777 coenzyme F420 hydrogenase/dehydrogenase beta subunit-like.
 
     0.662
RPE_1301
PFAM: protein of unknown function DUF427; KEGG: rpb:RPB_4022 protein of unknown function DUF427.
       0.660
RPE_2101
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: rpc:RPC_2188 peptidoglycan glycosyltransferase.
   
 
 0.611
RPE_1299
KEGG: rpc:RPC_1244 hypothetical protein.
 
     0.570
RPE_0326
Antenna complex, alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
     0.506
RPE_3936
TIGRFAM: bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase, 4VR; KEGG: rpc:RPC_3813 bacteriochlorophyll 4-vinyl reductase.
 
     0.496
msrA-2
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
    
 0.450
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.