STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1316PFAM: Squalene/phytoene synthase; KEGG: rpc:RPC_1262 squalene/phytoene synthase. (350 aa)    
Predicted Functional Partners:
RPE_1315
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rpc:RPC_1261 amine oxidase.
 
 
 0.999
RPE_1338
TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: rpb:RPB_3990 geranylgeranyl reductase.
 
 
 0.974
RPE_1324
Farnesyl-diphosphate synthase; PFAM: Polyprenyl synthetase; KEGG: rpc:RPC_1290 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
 0.962
RPE_1323
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rpc:RPC_1289 FAD dependent oxidoreductase.
 
  
 0.918
RPE_0176
Farnesyl-diphosphate synthase; PFAM: Polyprenyl synthetase; KEGG: rpc:RPC_0497 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.915
RPE_2904
KEGG: rpc:RPC_2773 phytoene synthase.
    
  0.911
RPE_4416
Farnesyltranstransferase; PFAM: Polyprenyl synthetase; KEGG: rpa:RPA1040 octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.911
RPE_1320
PFAM: hydroxyneurosporene synthase; KEGG: rpc:RPC_1288 hydroxyneurosporene synthase.
 
  
 0.891
RPE_2557
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.831
bchN
Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
    0.821
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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