STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1377Transcriptional regulator, DeoR family; PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: rpc:RPC_1360 transcriptional regulator, DeoR family. (274 aa)    
Predicted Functional Partners:
RPE_0769
6-phosphofructokinase; PFAM: PfkB domain protein; KEGG: rpc:RPC_0700 PfkB; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.963
RPE_1378
PFAM: FAD dependent oxidoreductase; KEGG: rpc:RPC_1361 FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.890
RPE_1734
PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: rpc:RPC_4045 GCN5-related N-acetyltransferase.
    
   0.860
RPE_1382
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_1365 binding-protein-dependent transport systems inner membrane component.
 
   
 0.843
RPE_1381
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_4214 binding-protein-dependent transport systems inner membrane component.
 
   
 0.829
RPE_1379
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rpc:RPC_1362 ABC transporter related.
 
   
 0.800
RPE_1380
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rpd:RPD_4067 ABC transporter related.
 
   
 0.785
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
  
 0.680
RPE_0572
TIGRFAM: sugar-phosphate isomerases, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: sth:STH2337 ribose 5-phosphate isomerase.
  
  
 0.653
RPE_1383
KEGG: rpc:RPC_1366 hypothetical protein.
 
     0.645
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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