STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1386PFAM: inner-membrane translocator; KEGG: rpc:RPC_1370 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (353 aa)    
Predicted Functional Partners:
RPE_1387
PFAM: inner-membrane translocator; KEGG: rpc:RPC_1371 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
RPE_1388
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1372 ABC transporter related.
  
 0.958
RPE_1389
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1373 ABC transporter related.
  
 0.931
RPE_1390
PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_1374 extracellular ligand-binding receptor.
 
    0.896
RPE_4222
PFAM: inner-membrane translocator; KEGG: rpc:RPC_4168 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.870
RPE_0594
PFAM: inner-membrane translocator; KEGG: rpa:RPA0667 putative membrane spanning subunit of ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.842
RPE_4224
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_4170 ABC transporter related.
  
 0.814
RPE_4213
PFAM: inner-membrane translocator; KEGG: rpa:RPA4028 possible ABC transport system permease protein.
  
 0.804
RPE_4225
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA4038 possible ABC transport system ATP-binding protein.
  
 0.773
RPE_4221
KEGG: rpc:RPC_4167 ABC transporter, periplasmic branched chain amino acid binding protein.
 
    0.766
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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