STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1400PFAM: MscS Mechanosensitive ion channel; KEGG: rpb:RPB_4194 MscS mechanosensitive ion channel. (579 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
    0.719
RPE_1600
PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: rpb:RPB_3734 sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
  
 0.533
RPE_1401
PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_3258 GCN5-related N-acetyltransferase.
       0.515
RPE_4371
KEGG: rpb:RPB_1632 hypothetical protein.
  
     0.510
RPE_3791
PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: rpd:RPD_1895 sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
  
 0.500
RPE_1399
PFAM: NUDIX hydrolase; KEGG: rpb:RPB_4195 NUDIX hydrolase.
       0.491
RPE_0411
PFAM: histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_0263 histidine kinase, HAMP region.
 
     0.463
RPE_4608
PFAM: Late embryogenesis abundant protein; KEGG: rpc:RPC_4601 hypothetical protein.
  
    0.462
RPE_4786
Periplasmic sensor hybrid histidine kinase; PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_4823 periplasmic sensor hybrid histidine kinase.
     
 0.404
RPE_1203
Putative CheA signal transduction histidine kinases; PFAM: Hpt domain protein.
     
 0.402
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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