STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1402PFAM: GCN5-related N-acetyltransferase; KEGG: eba:p1B136 putative histone acetyltransferase-related protein. (173 aa)    
Predicted Functional Partners:
RPE_1403
KEGG: rpc:RPC_2943 hypothetical protein.
 
 
   0.971
RPE_1144
KEGG: rpc:RPC_3552 hypothetical protein.
 
 
   0.880
RPE_1639
KEGG: rpc:RPC_1609 hypothetical protein.
 
 
   0.878
RPE_1489
KEGG: plu:plu3889 hypothetical protein.
 
 
   0.790
RPE_3421
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: rpb:RPB_2380 transcriptional regulator, XRE family.
  
     0.418
RPE_0210
PFAM: peptidase M22, glycoprotease; KEGG: rpc:RPC_0464 peptidase M22, glycoprotease.
  
 
 0.414
RPE_0249
PFAM: transposase, IS4 family protein; KEGG: rpc:RPC_2070 transposase, IS4.
  
     0.403
RPE_1901
PFAM: transposase, IS4 family protein; KEGG: rpc:RPC_2070 transposase, IS4.
  
     0.403
RPE_2182
PFAM: transposase, IS4 family protein; KEGG: rpc:RPC_2070 transposase, IS4.
  
     0.403
RPE_4485
PFAM: transposase, IS4 family protein; KEGG: rpc:RPC_2070 transposase, IS4.
  
     0.403
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.