STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1404PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpd:RPD_4046 TonB-dependent receptor. (779 aa)    
Predicted Functional Partners:
RPE_2957
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpa:RPA1816 putative outer membrane receptor for iron transport.
  
   
 0.688
RPE_2636
KEGG: rpb:RPB_3129 secretin/TonB, short-like protein.
 
 
 0.667
RPE_3463
KEGG: rpb:RPB_2223 hypothetical protein.
 
 
 0.664
RPE_3471
TIGRFAM: TonB family protein; KEGG: rpc:RPC_2906 TonB-like.
 
 
 0.654
RPE_2718
PFAM: Secretin/TonB, short N-terminal domain; KEGG: rpb:RPB_3129 secretin/TonB, short-like protein.
 
 
 0.645
RPE_2394
TIGRFAM: outer membrane autotransporter barrel domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Autotransporter beta- domain protein; KEGG: rpb:RPB_3437 outer membrane autotransporter.
    
 
 0.642
RPE_3144
TIGRFAM: TonB family protein; KEGG: rpa:RPA2129 possible energy transducer TonB, C-terminal region.
 
 
 0.642
RPE_4557
PFAM: Secretin/TonB, short N-terminal domain; KEGG: rpb:RPB_2211 hypothetical protein.
 
 
 0.642
RPE_4581
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: rpc:RPC_4542 TonB-like.
 
 
 0.639
RPE_2645
PFAM: Secretin/TonB, short N-terminal domain; KEGG: rpb:RPB_2211 hypothetical protein.
 
 
 0.638
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.