STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1520PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: nfa:nfa29060 hypothetical protein. (224 aa)    
Predicted Functional Partners:
RPE_1511
Cytidyltransferase-related domain; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
 
   
 0.811
RPE_1515
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cbu:CBU_0682 hypothetical protein.
 
 
 
 0.804
RPE_1512
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: cbu:CBU_0679 oxidoreductase, Gfo/Idh/MocA family.
 
     0.772
RPE_1509
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cbu:CBU_0676 NAD dependent epimerase/dehydratase.
 
   
 0.761
RPE_1519
KEGG: mag:amb0076 hypothetical protein.
 
     0.727
RPE_1506
KEGG: cbu:CBU_0674 sugar isomerase family protein.
 
 
   0.723
RPE_1516
dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: rpa:RPA3925 putative dTDP-glucose 4,6-dehydratase.
 
  
 0.712
RPE_2443
KEGG: nha:Nham_4457 hypothetical protein.
  
     0.703
RPE_2444
KEGG: nha:Nham_4458 putative threonine efflux protein.
  
     0.696
RPE_1510
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cbu:CBU_0677 NAD dependent epimerase/dehydratase family protein.
 
     0.676
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.