STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1527PFAM: flagellar FlaF family protein; KEGG: rpa:RPA3913 putative flagellar protein FlaF. (121 aa)    
Predicted Functional Partners:
RPE_1526
PFAM: flagellar FlbT family protein; KEGG: rpc:RPC_1491 flagellar FlbT.
 
  
 0.996
RPE_4498
KEGG: rpd:RPD_2371 hypothetical protein.
 
  
 0.977
RPE_1525
Protein of unknown function DUF1522; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
  
 0.976
RPE_4499
PFAM: protein of unknown function DUF1522; KEGG: rpa:RPA2297 hypothetical protein.
 
  
 0.955
RPE_1504
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1486 flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
 
  
 0.926
RPE_1551
Flagellar basal body rod protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
  
 0.915
RPE_0966
Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.879
RPE_1536
KEGG: rpc:RPC_1505 flageller protein FlgA.
 
  
 0.869
RPE_0964
PFAM: protein of unknown function DUF1153; KEGG: nha:Nham_0692 protein of unknown function DUF1153.
   
    0.864
RPE_1539
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
    0.864
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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