STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1653TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_1629 3-oxoadipate enol-lactonase. (260 aa)    
Predicted Functional Partners:
RPE_4839
PFAM: Carboxymuconolactone decarboxylase; KEGG: rpd:RPD_0939 carboxymuconolactone decarboxylase.
 
 0.990
RPE_4908
PFAM: iron-containing alcohol dehydrogenase; KEGG: rpa:RPA4822 possible alcohol dehydrogenase.
     
 0.901
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.865
RPE_2982
PFAM: alpha/beta hydrolase fold; KEGG: atc:AGR_C_2897 hypothetical protein.
  
   
 0.646
RPE_2310
PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_3146 alpha/beta hydrolase fold.
  
   
 0.588
RPE_3808
KEGG: rpa:RPA1781 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase, FAD-binding.
 
  
 0.564
RPE_0133
PFAM: protein of unknown function DUF29; KEGG: rpc:RPC_0539 protein of unknown function DUF29.
    
  0.557
RPE_0134
PFAM: protein of unknown function DUF29; KEGG: rpc:RPC_0539 protein of unknown function DUF29.
    
  0.557
RPE_4358
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
  
 
 0.528
RPE_1654
PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rpa:RPA3804 hypothetical protein.
       0.505
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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