STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1683KEGG: rpc:RPC_1653 hypothetical protein. (84 aa)    
Predicted Functional Partners:
RPE_1684
PFAM: PGAP1 family protein; KEGG: rpd:RPD_1818 hypothetical protein.
       0.625
RPE_0710
TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: rpd:RPD_4352 flavoprotein WrbA.
   
  
 0.616
RPE_1682
D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: rpc:RPC_1652 D-amino-acid dehydrogenase.
       0.520
RPE_0032
PFAM: nuclease (SNase domain protein); KEGG: rpc:RPC_0029 nuclease (SNase-like).
 
     0.475
RPE_1532
KEGG: rpc:RPC_1498 putative flagellar assembly protein.
  
     0.456
RPE_1040
PFAM: flagellar hook-length control protein; KEGG: rpc:RPC_0986 flagellar hook-length control protein.
  
     0.454
RPE_2823
PFAM: Ubiquinol-cytochrome C chaperone; KEGG: rpc:RPC_2673 ubiquinol-cytochrome c chaperone.
  
     0.428
RPE_4654
PFAM: CHAD domain containing protein; KEGG: rpc:RPC_4651 CHAD.
  
     0.425
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
  
    0.421
parC
DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
  
    0.421
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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