STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1692PFAM: protein of unknown function DUF1445; KEGG: rpc:RPC_1666 protein of unknown function DUF1445; Belongs to the D-glutamate cyclase family. (271 aa)    
Predicted Functional Partners:
RPE_1219
TIGRFAM: urea amidolyase related protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rpd:RPD_2188 allophanate hydrolase subunit 2.
  
    0.960
RPE_3037
TIGRFAM: conserved hypothetical protein; PFAM: Allophanate hydrolase subunit 1; KEGG: rpc:RPC_2624 hypothetical protein.
 
    0.918
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
    0.884
RPE_3038
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: rpc:RPC_2623 allophanate hydrolase subunit 2.
 
    0.855
RPE_1691
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_1667 transcriptional regulator, LysR family.
 
     0.742
RPE_1693
PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_1665 extracellular ligand-binding receptor.
 
     0.724
RPE_1797
KEGG: rpd:RPD_1882 hypothetical protein.
 
     0.694
RPE_1845
Peptidase C15, pyroglutamyl peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
  
    0.591
RPE_3781
PFAM: regulatory proteins, IclR; KEGG: rpc:RPC_2225 transcriptional regulator, IclR family.
  
    0.585
RPE_4120
PFAM: regulatory proteins, IclR; KEGG: rpc:RPC_3996 transcriptional regulator, IclR family.
  
    0.585
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.