STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1702PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpd:RPD_1861 short-chain dehydrogenase/reductase SDR. (262 aa)    
Predicted Functional Partners:
nuoC
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 
 0.862
RPE_1701
KEGG: rpd:RPD_1858 putative acetyl-CoA acetyltransferase.
 
   0.787
RPE_1705
KEGG: rpb:RPB_3603 hypothetical protein.
 
 
 0.701
RPE_1703
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpa:RPA1758 enoyl-CoA hydratase.
  
 0.657
RPE_1704
PFAM: aminoglycoside phosphotransferase; KEGG: rpd:RPD_1863 aminoglycoside phosphotransferase.
 
 
 0.652
RPE_0054
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_0055 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 
 0.592
RPE_2877
PFAM: sulfatase; KEGG: rpc:RPC_2738 sulfatase.
   
 
 0.580
RPE_2671
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1067 TPR repeat protein.
  
 
 0.519
RPE_0769
6-phosphofructokinase; PFAM: PfkB domain protein; KEGG: rpc:RPC_0700 PfkB; Belongs to the carbohydrate kinase PfkB family.
   
  
 0.516
tal
Glucose-6-phosphate isomerase / transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
  
 0.493
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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