STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1794KEGG: rpa:RPA1776 possible lipid transfer protein. (379 aa)    
Predicted Functional Partners:
RPE_1795
PFAM: protein of unknown function DUF35; KEGG: bja:bll2959 hypothetical protein.
 
 0.996
RPE_3225
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: eba:ebA2038 fusion of 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.987
RPE_0674
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rpb:RPB_4604 3-hydroxyacyl-CoA dehydrogenase.
  
 0.986
RPE_3780
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rpb:RPB_1746 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.986
RPE_1793
PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpd:RPD_1878 short-chain dehydrogenase/reductase SDR.
 
 
 0.865
RPE_3528
PFAM: MaoC domain protein dehydratase; KEGG: rpb:RPB_2352 MaoC-like dehydratase.
 
 
 0.845
RPE_0119
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpd:RPD_0270 acyl-CoA dehydrogenase-like.
 
 
 0.831
RPE_0585
2,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpd:RPD_0880 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.729
RPE_3210
Hypothetical protein; KEGG: bja:blr6087 3-hydroxybutyryl-CoA dehydrogenase.
  
 
 0.727
RPE_4847
PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rpc:RPC_4878 3-hydroxybutyryl-CoA dehydrogenase.
  
 
 0.727
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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