STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1815PFAM: Radical SAM domain protein; KEGG: rpc:RPC_1725 radical SAM. (382 aa)    
Predicted Functional Partners:
RPE_1817
KEGG: rpc:RPC_1727 hypothetical protein.
 
   
 0.870
RPE_4468
KEGG: zmo:ZMO1548 squalene--hopene cyclase; TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase.
 
   
 0.834
RPE_1814
PFAM: purine and other phosphorylases, family 1; KEGG: rpc:RPC_1721 hypothetical protein.
 
   
 0.829
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
 
   
 0.747
RPE_1813
PFAM: amine oxidase; KEGG: rpc:RPC_1719 amine oxidase.
 
    0.736
RPE_1811
PFAM: Squalene/phytoene synthase; KEGG: rpc:RPC_1717 squalene/phytoene synthase.
 
   
 0.631
pqqC
Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
 
  
 0.622
RPE_4683
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: bja:blr6189 hypothetical protein.
  
  
 0.612
RPE_1812
PFAM: Squalene/phytoene synthase; KEGG: rpc:RPC_1718 squalene/phytoene synthase.
 
   
 0.585
RPE_3094
PFAM: FMN-binding domain protein; KEGG: rpb:RPB_3141 FMN-binding.
  
  
 0.570
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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