STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1822PFAM: protein of unknown function DUF892; KEGG: rpc:RPC_1730 protein of unknown function DUF892. (165 aa)    
Predicted Functional Partners:
RPE_3645
Catalase; PFAM: manganese containing catalase; protein of unknown function DUF892; KEGG: bja:bll3758 Mn-containing catalase.
 
   
0.810
RPE_1821
Amidohydrolase; KEGG: rpc:RPC_1729 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.
       0.574
RPE_3724
PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: rpc:RPC_3685 ATP dependent DNA ligase.
 
     0.556
RPE_3649
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_1223 alcohol dehydrogenase, zinc-binding.
 
    0.458
RPE_3648
PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpb:RPB_1505 short-chain dehydrogenase/reductase SDR.
  
     0.429
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.