STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1898Prohead peptidase. Unknown type peptidase. MEROPS family U35; TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35, phage prohead HK97; KEGG: rpb:RPB_3484 peptidase U35, phage prohead HK97. (208 aa)    
Predicted Functional Partners:
RPE_1908
TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: nwi:Nwi_1167 phage major capsid protein, HK97.
  
 0.954
RPE_1895
TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: rpc:RPC_1801 phage portal protein, HK97.
 
   
 0.841
RPE_1914
TIGRFAM: phiE125 gp8 family; KEGG: rpc:RPC_1813 phage conserved hypothetical protein, phiE125 gp8.
 
   
 0.812
RPE_1917
TIGRFAM: phage major tail protein, TP901-1 family; KEGG: rpc:RPC_1816 phage major tail protein, TP901-1.
 
    0.812
RPE_1921
TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_1821 hypothetical protein.
 
   
 0.812
RPE_1922
Hypothetical protein; KEGG: rpd:RPD_1991 phage conserved hypothetical protein BR0599.
 
   
 0.811
RPE_1920
KEGG: rpc:RPC_1820 gene transfer agent (GTA) like protein.
 
    0.806
RPE_1918
KEGG: nha:Nham_1420 gene transfer agent (GTA) like protein.
 
    0.804
RPE_1893
PFAM: protein of unknown function DUF264; KEGG: rpc:RPC_1800 protein of unknown function DUF264.
 
     0.801
RPE_1923
TIGRFAM: putative phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein; KEGG: rpc:RPC_1823 putative phage cell wall peptidase, NlpC/P60.
 
     0.801
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.