STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1920KEGG: rpc:RPC_1820 gene transfer agent (GTA) like protein. (193 aa)    
Predicted Functional Partners:
RPE_1918
KEGG: nha:Nham_1420 gene transfer agent (GTA) like protein.
 
    0.977
RPE_1917
TIGRFAM: phage major tail protein, TP901-1 family; KEGG: rpc:RPC_1816 phage major tail protein, TP901-1.
 
     0.958
RPE_1919
KEGG: rpc:RPC_1819 hypothetical protein.
 
     0.951
RPE_1916
KEGG: rpc:RPC_1815 gene transfer agent (GTA) orfg8.
 
    0.944
RPE_1914
TIGRFAM: phiE125 gp8 family; KEGG: rpc:RPC_1813 phage conserved hypothetical protein, phiE125 gp8.
 
    0.922
RPE_1923
TIGRFAM: putative phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein; KEGG: rpc:RPC_1823 putative phage cell wall peptidase, NlpC/P60.
 
  
 0.919
RPE_1921
TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_1821 hypothetical protein.
 
    0.914
RPE_1925
KEGG: rpc:RPC_1825 hypothetical protein.
 
  
 0.913
RPE_1922
Hypothetical protein; KEGG: rpd:RPD_1991 phage conserved hypothetical protein BR0599.
 
     0.880
RPE_1924
KEGG: rpc:RPC_1824 gene transfer agent (GTA) orfg15.
 
     0.864
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.