STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1945PFAM: protein of unknown function DUF1109; KEGG: sme:SMb20532 hypothetical protein. (211 aa)    
Predicted Functional Partners:
RPE_1946
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpd:RPD_1910 sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.968
RPE_1950
PFAM: DoxX family protein; KEGG: sme:SMb20527 hypothetical protein.
 
   
 0.796
RPE_1947
KEGG: sme:SMb20530 hypothetical protein.
 
   
 0.723
RPE_1949
KEGG: bps:BPSL1690 hypothetical protein.
 
   
 0.702
RPE_1948
PFAM: protein of unknown function DUF692; KEGG: sme:SMb20529 hypothetical protein; Belongs to the UPF0276 family.
 
   
 0.652
RPE_3300
KEGG: rpa:RPA1461 hypothetical protein.
  
     0.556
RPE_4172
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_4118 transcriptional regulator, XRE family.
  
     0.438
RPE_0646
PFAM: protein of unknown function DUF423; KEGG: rpc:RPC_0815 protein of unknown function DUF423.
  
     0.414
RPE_2275
PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: rpc:RPC_3182 peptidase C14, caspase catalytic subunit P20.
  
     0.412
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.