STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1950PFAM: DoxX family protein; KEGG: sme:SMb20527 hypothetical protein. (174 aa)    
Predicted Functional Partners:
RPE_1949
KEGG: bps:BPSL1690 hypothetical protein.
 
  
 0.989
RPE_1948
PFAM: protein of unknown function DUF692; KEGG: sme:SMb20529 hypothetical protein; Belongs to the UPF0276 family.
 
  
 0.986
RPE_1947
KEGG: sme:SMb20530 hypothetical protein.
 
  
 0.964
RPE_1945
PFAM: protein of unknown function DUF1109; KEGG: sme:SMb20532 hypothetical protein.
 
   
 0.796
RPE_4358
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
   
    0.688
RPE_3251
Endonuclease; KEGG: eba:ebA6352 endonuclease.
  
  
 0.671
RPE_2394
TIGRFAM: outer membrane autotransporter barrel domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Autotransporter beta- domain protein; KEGG: rpb:RPB_3437 outer membrane autotransporter.
   
    0.670
RPE_1946
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpd:RPD_1910 sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.637
RPE_4016
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rpc:RPC_3893 conjugal transfer protein TrbG/VirB9/CagX.
   
    0.533
RPE_4021
SMART: AAA ATPase; KEGG: rpc:RPC_3898 ATPase.
   
    0.509
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.