STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1969KEGG: rpc:RPC_1950 hypothetical protein. (217 aa)    
Predicted Functional Partners:
RPE_1971
KEGG: rpc:RPC_1952 ABC-type Co2+ transport system, periplasmic component.
 
  
  0.994
RPE_4295
KEGG: rpc:RPC_1958 hypothetical protein.
 
  
  0.978
RPE_1970
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: rpc:RPC_1951 cobalamin (vitamin B12) biosynthesis CbiM protein.
 
    0.958
RPE_1968
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: rpc:RPC_1949 cobalt ABC transporter CbiQ, permease subunit.
 
     0.952
RPE_4293
KEGG: rpc:RPC_1960 hypothetical protein.
  
  
 
0.922
RPE_1913
PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: rpc:RPC_1812 peptidase S1 and S6, chymotrypsin/Hap.
    
 0.865
RPE_4294
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: rpc:RPC_1959 cobalamin (vitamin B12) biosynthesis CbiM protein.
 
    0.824
RPE_4292
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: rpc:RPC_1961 cobalt ABC transporter CbiQ, permease subunit.
 
     0.798
RPE_4291
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1962 ABC transporter related.
 
     0.797
RPE_1972
Transcriptional regulator, CopG family; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
 
     0.688
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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