Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
RPE_1982PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpc:RPC_2071 TRAP dicarboxylate transporter-DctM subunit. (612 aa)    
Predicted Functional Partners:
RPE_1983
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rpc:RPC_2072 tripartite ATP-independent periplasmic transporter, DctQ component.
 
 
 0.994
RPE_0097
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: sme:SMc04287 hypothetical protein.
 
  
 0.824
RPE_1981
TRAP dicarboxylate transporter; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.822
RPE_0096
TRAP dicarboxylate transporter; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.811
RPE_2210
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpa:RPA2047 TrapT family, DctP subunit, C4-dicarboxylate periplasmic binding protein.
 
   
 0.591
RPE_2876
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; Twin-arginine translocation pathway signal; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpb:RPB_2686 TRAP dicarboxylate transporter DctP subunit.
 
   
 0.577
moaA
GTP cyclohydrolase subunit MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
       0.452
RPE_2211
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rpd:RPD_2114 tripartite ATP-independent periplasmic transporter, DctQ component.
 
     0.447
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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