STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapCPilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (136 aa)    
Predicted Functional Partners:
RPE_1995
PFAM: SpoVT/AbrB domain protein; KEGG: rpd:RPD_2062 SpoVT/AbrB-like.
 
 
 0.994
RPE_2805
KEGG: sme:SMc00686 hypothetical protein.
 
 
 0.964
RPE_0472
KEGG: gvi:gsr4342 virulence-associated protein VapB homolog.
 
 
 0.780
RPE_3246
PFAM: PilT protein domain protein; KEGG: mlo:mlr5903 plasmid stabilization protein.
  
     0.641
RPE_4025
KEGG: rpc:RPC_3902 hypothetical protein.
   
   0.588
RPE_0467
Phosphopantothenate-cysteine ligase / Phosphopantothenoylcysteine decarboxylase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
   
 
 0.576
vapC-5
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.535
RPE_2383
KEGG: rpb:RPB_2118 hypothetical protein.
   
 
 0.521
RPE_4766
KEGG: rpc:RPC_4801 hypothetical protein.
 
   0.516
RPE_2551
KEGG: rpc:RPC_2434 hypothetical protein.
 
   0.508
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.