Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPE_2005PFAM: FAD linked oxidase domain protein; KEGG: rpd:RPD_2071 FAD linked oxidase-like. (460 aa)    
Predicted Functional Partners:
RPE_2004
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpd:RPD_2070 thiamine pyrophosphate enzyme-like TPP-binding.
   
 
 0.869
RPE_4848
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: rpd:RPD_0931 electron transfer flavoprotein, alpha subunit.
 
 
 0.672
RPE_4170
L-lactate dehydrogenase (cytochrome); PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: rpd:RPD_3916 L-lactate dehydrogenase (cytochrome).
 
 0.651
RPE_4849
PFAM: electron transfer flavoprotein beta-subunit; KEGG: rpa:RPA4750 electron transfer flavoprotein beta chain, (ETFSS).
 
 
 0.651
RPE_4517
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: rpc:RPC_4447 electron transfer flavoprotein beta-subunit.
 
 
 0.641
RPE_4518
PFAM: electron transfer flavoprotein beta-subunit; KEGG: rpc:RPC_4448 electron transfer flavoprotein beta-subunit.
 
 
 0.622
nuoC
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
   0.537
RPE_4692
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: rpc:RPC_4734 protein of unknown function DUF224, cysteine-rich region.
 
  
 0.532
RPE_0683
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rpc:RPC_0761 glutamate synthase (ferredoxin).
     
 0.477
RPE_2003
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:blr3793 putative lyase.
     
 0.445
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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