Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
RPE_2011PFAM: OmpA/MotB domain protein; KEGG: rpc:RPC_2101 OmpA/MotB. (272 aa)    
Predicted Functional Partners:
RPE_2010
PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpc:RPC_2100 MotA/TolQ/ExbB proton channel.
 
 0.998
RPE_1149
KEGG: rpc:RPC_1088 chemotaxis protein.
  
 0.985
RPE_1504
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1486 flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
 
  
 0.930
RPE_0965
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
  
 0.900
RPE_1539
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
 
 0.900
RPE_1540
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: rpc:RPC_1509 flagellar motor switch protein FliM.
 
  
 0.890
RPE_1503
PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: rpb:RPB_3817 hypothetical protein.
 
  
 0.885
RPE_0966
Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
 
  
 0.882
RPE_1552
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1518 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
 
  
 0.876
RPE_1538
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1507 flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
 
 
 0.867
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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