STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2028Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rpb:RPB_1903 gluconolactonase precursor. (310 aa)    
Predicted Functional Partners:
RPE_3712
Gluconate kinase; KEGG: rpc:RPC_3674 carbohydrate kinase, thermoresistant glucokinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase.
    
 0.925
RPE_1705
KEGG: rpb:RPB_3603 hypothetical protein.
 
     0.721
RPE_0416
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpb:RPB_1973 epoxide hydrolase.
 
    0.650
RPE_1678
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rpd:RPD_1806 glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.626
RPE_4126
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpa:RPA1762 putative acyl-CoA dehydrogenase.
  
   
 0.593
RPE_1704
PFAM: aminoglycoside phosphotransferase; KEGG: rpd:RPD_1863 aminoglycoside phosphotransferase.
 
     0.546
RPE_2608
PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_2484 putative NADH oxidoreductase.
 
    0.507
RPE_3525
PFAM: Pyrrolo-quinoline quinone; KEGG: rpb:RPB_2355 pyrrolo-quinoline quinone.
  
   
 0.486
RPE_2029
PFAM: GCN5-related N-acetyltransferase; KEGG: rpb:RPB_1904 GCN5-related N-acetyltransferase.
       0.471
RPE_4336
NHL repeat-containing protein; KEGG: rpa:RPA4432 NHL repeat.
 
   
 0.468
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.