STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2031PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpc:RPC_2122 ATPase associated with various cellular activities, AAA_5. (280 aa)    
Predicted Functional Partners:
RPE_2033
KEGG: rpb:RPB_1913 hypothetical protein.
 
    0.861
RPE_1853
PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: rpc:RPC_1761 glutathione-dependent formaldehyde-activating, GFA.
  
    0.533
RPE_0618
PFAM: von Willebrand factor, type A; KEGG: rpa:RPA1458 dinitrification protein NorD.
  
  
 0.464
RPE_0672
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rpc:RPC_0737 acyl-CoA dehydrogenase-like.
  
     0.459
RPE_3275
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)))/Phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: rpb:RPB_2497 bifunctional oxaloacetate decarboxylating malate dehydrogenase (NADP+)/phosphate acetyltransferase.
  
    0.459
RPE_1074
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpc:RPC_1156 acyl-CoA dehydrogenase-like.
  
     0.451
RPE_2032
Diguanylate cyclase with PAS/PAC sensor; KEGG: rpd:RPD_3460 GGDEF domain; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.447
RPE_3166
PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: rpa:RPA2051 putative ornithine decarboxylase.
   
 
 0.441
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.