STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2033KEGG: rpb:RPB_1913 hypothetical protein. (391 aa)    
Predicted Functional Partners:
RPE_2031
PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpc:RPC_2122 ATPase associated with various cellular activities, AAA_5.
 
    0.861
RPE_2034
SMART: Rhodanese domain protein; KEGG: rpd:RPD_3458 rhodanese-like.
       0.564
RPE_1211
PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpd:RPD_0615 ATPase associated with various cellular activities, AAA_5.
 
    0.520
RPE_1657
PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpc:RPC_1633 ATPase associated with various cellular activities, AAA_5.
 
    0.447
RPE_2035
3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; KEGG: rpa:RPA3613 putative thiosulfate sulfurtransferase.
       0.427
RPE_0672
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rpc:RPC_0737 acyl-CoA dehydrogenase-like.
  
     0.416
RPE_1074
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpc:RPC_1156 acyl-CoA dehydrogenase-like.
  
     0.411
RPE_2856
TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rpc:RPC_2695 phenylacetic acid degradation-related protein.
  
     0.401
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.