STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2129PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpc:RPC_3286 ErfK/YbiS/YcfS/YnhG. (258 aa)    
Predicted Functional Partners:
RPE_2130
KEGG: rpc:RPC_3285 hypothetical protein.
       0.534
RPE_3407
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: rpc:RPC_3328 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.526
RPE_0698
KEGG: rpc:RPC_0771 hypothetical protein.
  
     0.494
RPE_4061
Phasin; TIGRFAM: phasin family protein; phasin; KEGG: rpc:RPC_3940 phasin 2.
  
     0.487
RPE_2141
PFAM: AsmA family protein; KEGG: rpc:RPC_3274 AsmA.
  
     0.437
RPE_1474
KEGG: rpc:RPC_1455 hypothetical protein.
  
     0.435
RPE_0724
KEGG: rpc:RPC_0752 hypothetical protein.
  
     0.432
RPE_1755
KEGG: rpc:RPC_4024 hypothetical protein.
  
     0.423
RPE_1397
KEGG: nha:Nham_1099 hypothetical protein.
  
     0.403
RPE_4782
KEGG: rpc:RPC_4819 hypothetical protein.
  
     0.401
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.