STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2136PFAM: YcfA family protein; KEGG: rpb:RPB_2021 YcfA-like. (64 aa)    
Predicted Functional Partners:
RPE_2135
PFAM: protein of unknown function UPF0150; KEGG: rpc:RPC_3280 protein of unknown function UPF0150.
 
 
 
 0.985
RPE_2134
PFAM: protein of unknown function UPF0150; KEGG: rpc:RPC_3281 protein of unknown function UPF0150.
   
 
 0.948
RPE_4348
PFAM: protein of unknown function UPF0150; KEGG: rpb:RPB_4320 protein of unknown function UPF0150.
 
 
 
 0.883
RPE_1057
KEGG: rpc:RPC_0969 hypothetical protein.
   
 
 0.859
RPE_4111
PFAM: protein of unknown function UPF0150; KEGG: rpb:RPB_1422 protein of unknown function UPF0150.
   
 
 0.857
RPE_2137
ATP-dependent DNA helicase, Rep family; PFAM: UvrD/REP helicase; KEGG: rpb:RPB_2023 UvrD/REP helicase.
       0.623
RPE_1392
TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: rpc:RPC_1376 addiction module toxin, RelE/StbE.
 
   
 0.416
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.