STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2138PFAM: protein of unknown function DUF1328; KEGG: bja:bsl6560 hypothetical protein. (57 aa)    
Predicted Functional Partners:
RPE_3903
PFAM: CsbD family protein; KEGG: hch:HCH_05492 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
  
 0.953
RPE_1369
PFAM: CsbD family protein; KEGG: rpc:RPC_1353 CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
  
 0.883
RPE_3931
PFAM: transport-associated; KEGG: rpc:RPC_3808 transport-associated.
  
  
 0.840
RPE_1728
PFAM: CBS domain containing protein; transport-associated; KEGG: rpc:RPC_4051 putative signal-transduction protein with CBS domains.
  
  
 0.838
RPE_2243
KEGG: rpc:RPC_3216 hypothetical protein.
 
  
 0.524
RPE_2137
ATP-dependent DNA helicase, Rep family; PFAM: UvrD/REP helicase; KEGG: rpb:RPB_2023 UvrD/REP helicase.
       0.487
RPE_4249
PFAM: ABC-2 type transporter; KEGG: dde:Dde_0841 polysaccharide ABC transporter, permease protein.
   
    0.481
glmS
Glutamine--fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
    0.469
RPE_4248
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0851 ATPase.
   
    0.469
RPE_2344
KEGG: rpc:RPC_3116 hypothetical protein.
  
  
 0.445
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.