STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2139KEGG: rpc:RPC_3277 hypothetical protein. (174 aa)    
Predicted Functional Partners:
RPE_2140
PFAM: FAD linked oxidase domain protein; KEGG: rpc:RPC_3276 FAD linked oxidase-like.
 
     0.663
RPE_3307
[Acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: bja:blr4082 malonyl-CoA:acyl carrier protein transacylase.
  
 
 0.610
RPE_4079
PFAM: AsmA family protein; KEGG: rpc:RPC_3951 AsmA.
 
     0.469
RPE_2023
PFAM: phosphopantetheine-binding; KEGG: rpc:RPC_2111 phosphopantetheine-binding.
 
 
 0.461
RPE_2252
PFAM: protein of unknown function DUF849; KEGG: rpa:RPA2141 hypothetical protein.
 
  
 0.457
RPE_2600
KEGG: rpc:RPC_2476 hypothetical protein.
  
 
   0.439
RPE_4745
KEGG: rpd:RPD_4331 hypothetical protein.
  
     0.409
RPE_4595
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: rpa:RPA1195 short-chain dehydrogenase.
 
 
 
 0.407
RPE_2141
PFAM: AsmA family protein; KEGG: rpc:RPC_3274 AsmA.
       0.405
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.