STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2145PFAM: protein of unknown function DUF1321; KEGG: rpc:RPC_3270 protein of unknown function DUF1321. (169 aa)    
Predicted Functional Partners:
RPE_4107
KEGG: rpc:RPC_3979 hypothetical protein; Belongs to the UPF0335 family.
  
   
 0.808
RPE_4131
PFAM: protein of unknown function DUF1013; KEGG: rpa:RPA4272 hypothetical protein.
  
   
 0.766
RPE_0461
DNA helicase/exodeoxyribonuclease V, subunit B; KEGG: rpc:RPC_0386 hypothetical protein.
  
     0.725
atpF1
H+-transporting two-sector ATPase, B/B' subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
   
 0.722
RPE_0460
DNA helicase/exodeoxyribonuclease V, subunit A; PFAM: UvrD/REP helicase; KEGG: rpc:RPC_0387 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
     0.716
RPE_4435
PFAM: protein of unknown function DUF1159; KEGG: rpc:RPC_4371 protein of unknown function DUF1159.
  
     0.700
lysS
KEGG: rpc:RPC_0730 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase, class 1c; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.698
RPE_0245
PFAM: protein of unknown function DUF1058; KEGG: rpc:RPC_0353 protein of unknown function DUF1058.
  
     0.678
fumC
Fumarase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.661
RPE_0162
KEGG: rpc:RPC_0510 hypothetical protein.
  
     0.658
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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