STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2167PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: ava:Ava_3253 DEAD/DEAH box helicase-like. (2056 aa)    
Predicted Functional Partners:
RPE_2166
KEGG: mca:MCA0729 hypothetical protein.
 
     0.838
RPE_2165
Hypothetical protein.
       0.773
RPE_2171
KEGG: tth:TTC1428 hypothetical protein.
 
     0.628
RPE_3238
TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: rpc:RPC_2997 filamentous haemagglutinin-like.
  
     0.571
RPE_2652
TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: bur:Bcep18194_B1068 haemagglutinin-like.
  
     0.555
RPE_2657
TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: rpc:RPC_2997 filamentous haemagglutinin-like.
  
     0.509
RPE_3241
KEGG: rpa:RPA1338 hypothetical protein.
  
     0.460
RPE_4237
PFAM: Capsule polysaccharide biosynthesis; KEGG: syn:slr2115 hypothetical protein.
  
     0.448
RPE_2168
PFAM: sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family.
       0.433
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.