STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2178HflK protein; HflC and HflK could encode or regulate a protease. (382 aa)    
Predicted Functional Partners:
RPE_2179
HflC protein; HflC and HflK could regulate a protease.
 
 
0.998
ftsH
Membrane protease FtsH catalytic subunit; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
  
 0.929
RPE_2172
PFAM: peptidase M41; AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mag:amb1687 ATP-dependent Zn protease; Belongs to the AAA ATPase family.
  
 0.927
RPE_2439
PFAM: peptidase M41; AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mag:amb1687 ATP-dependent Zn protease; Belongs to the AAA ATPase family.
  
 0.927
RPE_2485
PFAM: peptidase M41; AAA ATPase, central domain protein; KEGG: mag:amb1687 ATP-dependent Zn protease; Belongs to the AAA ATPase family.
  
 0.927
hflX
GTP-binding protein, HSR1-related protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
  
  
 0.888
yidC
Protein translocase subunit yidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
 
 0.750
RPE_2330
PFAM: Rhomboid family protein; KEGG: rpc:RPC_3129 rhomboid-like protein.
   
 0.741
nuoC
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 
 0.660
RPE_2174
PFAM: thymidylate synthase; KEGG: rpa:RPA3493 thymidylate synthase.
   
 
 0.579
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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