STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2183KEGG: rpc:RPC_3258 hypothetical protein. (180 aa)    
Predicted Functional Partners:
RPE_4371
KEGG: rpb:RPB_1632 hypothetical protein.
 
     0.645
RPE_0832
KEGG: rpc:RPC_2959 putative outer membrane protein precursor.
  
     0.613
RPE_0411
PFAM: histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_0263 histidine kinase, HAMP region.
  
     0.601
RPE_2095
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpc:RPC_4299 TonB-dependent receptor.
  
     0.589
RPE_0958
TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: rpd:RPD_3849 outer membrane autotransporter barrel.
  
     0.548
RPE_0728
Porin; PFAM: porin; KEGG: rpc:RPC_0748 putative outer membrane protein.
  
     0.525
RPE_3191
PFAM: Radical SAM domain protein; KEGG: rpa:RPA2614 hypothetical protein.
  
     0.518
RPE_2111
KEGG: rpb:RPB_1999 hypothetical protein.
  
     0.508
RPE_4165
KEGG: rpa:RPA4315 hypothetical protein.
  
     0.494
RPE_4496
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: rpd:RPD_2373 regulatory protein, LuxR.
  
     0.470
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.