STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2190Putative AtsE; KEGG: rpc:RPC_3252 putative AtsE. (131 aa)    
Predicted Functional Partners:
RPE_2191
Transcriptional regulator/antitoxin, MazE; PFAM: SpoVT/AbrB domain protein; KEGG: rpc:RPC_3251 transcriptional regulator/antitoxin, MazE.
       0.517
RPE_2192
Transcriptional modulator of MazE/toxin, MazF; PFAM: PemK family protein; KEGG: gka:GK1648 ppGpp-regulated growth inhibitor (ChpA/MazF).
       0.517
RPE_3654
PFAM: HWE histidine kinase; KEGG: rpc:RPC_0615 signal transduction histidine kinase.
  
     0.491
RPE_2242
KEGG: rpc:RPC_3217 hypothetical protein.
  
     0.490
RPE_2243
KEGG: rpc:RPC_3216 hypothetical protein.
  
     0.475
RPE_4266
KEGG: rpc:RPC_4227 hypothetical protein.
  
     0.465
RPE_0006
PFAM: HWE histidine kinase; KEGG: nwi:Nwi_0559 HWE histidine kinase.
  
     0.423
RPE_1748
PFAM: HWE histidine kinase; KEGG: rpc:RPC_4031 signal transduction histidine kinase.
  
     0.422
RPE_1778
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rpa:RPA0992 probable transcriptional regulator, Crp/Fnr family.
  
     0.411
RPE_4607
KEGG: rpc:RPC_4600 late embryogenesis abundant protein.
 
     0.406
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.