STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2200PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr2421 MFS permease. (446 aa)    
Predicted Functional Partners:
RPE_4073
PFAM: extracellular solute-binding protein, family 1; KEGG: rpd:RPD_1439 extracellular solute-binding protein, family 1.
  
  
 0.830
RPE_1802
PFAM: HpcH/HpaI aldolase; KEGG: rpa:RPA3755 putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.622
RPE_4120
PFAM: regulatory proteins, IclR; KEGG: rpc:RPC_3996 transcriptional regulator, IclR family.
 
  
 0.573
RPE_3781
PFAM: regulatory proteins, IclR; KEGG: rpc:RPC_2225 transcriptional regulator, IclR family.
  
  
 0.501
RPE_0218
PFAM: PfkB domain protein; KEGG: rpd:RPD_0251 PfkB.
  
  
 0.490
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.476
RPE_2201
PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rpc:RPC_3244 substrate-binding region of ABC-type glycine betaine transport system.
       0.473
RPE_2202
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_2105 ABC transporter related.
       0.473
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
  
 0.471
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
  
  
 0.451
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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