STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_2201PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rpc:RPC_3244 substrate-binding region of ABC-type glycine betaine transport system. (516 aa)    
Predicted Functional Partners:
RPE_2202
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_2105 ABC transporter related.
 0.999
RPE_1299
KEGG: rpc:RPC_1244 hypothetical protein.
  
    0.685
RPE_2270
KEGG: rpc:RPC_1244 hypothetical protein.
  
    0.685
RPE_4605
KEGG: rpc:RPC_4598 hypothetical protein.
  
    0.685
RPE_4608
PFAM: Late embryogenesis abundant protein; KEGG: rpc:RPC_4601 hypothetical protein.
  
    0.685
RPE_1353
PFAM: photosynthetic reaction centre, H-chain; PRC-barrel domain protein; KEGG: rpc:RPC_1319 photosynthetic reaction centre, H-chain.
  
    0.620
RPE_4427
Transcriptional regulator, MarR family with acetyltransferase activity; PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR; KEGG: bja:bll2512 putative acetyltransferase.
  
  
 0.617
RPE_2057
KEGG: rpc:RPC_2150 membrane protein-like.
 
     0.609
RPE_2320
PFAM: regulatory protein, MarR; KEGG: rpc:RPC_3135 transcriptional regulator, MarR family.
 
  
 0.595
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.568
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.